PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003392.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 1048aa    MW: 111908 Da    PI: 4.8048
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003392.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19144195256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Do003392.1 144 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 195
                 8********.**********96554..**************************95 PP

2AP262.68.7e-20500551256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Do003392.1 500 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPIEAARAYDRAAFRMRGA 551
                 8********.**********96554..**************************95 PP

3AP259.95.8e-19854905256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr ++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Do003392.1 854 KYRGVRLRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 905
                 8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31143203IPR001471AP2/ERF domain
SMARTSM003804.9E-37144208IPR001471AP2/ERF domain
PROSITE profilePS5103224.105144202IPR001471AP2/ERF domain
CDDcd000181.71E-28144203No hitNo description
SuperFamilySSF541714.84E-22144203IPR016177DNA-binding domain
PfamPF008471.0E-13144194IPR001471AP2/ERF domain
PRINTSPR003671.3E-12145156IPR001471AP2/ERF domain
PRINTSPR003671.3E-12184204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31499559IPR001471AP2/ERF domain
SMARTSM003802.6E-36500564IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22500559IPR016177DNA-binding domain
PfamPF008473.9E-14500550IPR001471AP2/ERF domain
PROSITE profilePS5103224.092500558IPR001471AP2/ERF domain
CDDcd000184.43E-28500559No hitNo description
Gene3DG3DSA:3.30.730.101.1E-30853913IPR001471AP2/ERF domain
SMARTSM003805.8E-36854918IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22854913IPR016177DNA-binding domain
PROSITE profilePS5103223.617854912IPR001471AP2/ERF domain
PfamPF008473.1E-13854904IPR001471AP2/ERF domain
CDDcd000181.65E-27854913No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MEFIGDAADV FALDFISDLL LGGDGRVPEA SPVVSDDVTF PVLQPQPDFQ PTMSSFLPPP  60
PQQQQGYIDL THEYMGSAPA APAVGEAAFR AQEPAPPVMI KFGSEPPSHV MPPLTISVPP  120
NSYSWAGPAS AAAPAAAAVE DYRKYRGVRQ RPWGKYAAEI RDPKRRGSRV WLGTYDTPVE  180
AARAYDRAAF RMRGAKAILN FPNEVGTRGA DLWAPPAAPA TQQVATAANK RKRQHQEDPD  240
DDVEVVAVVN KAVKVEVPSS SSSTQVSSST SPSSMSTRET TASSTVTSAT AETGAGAEWL  300
PVTPSGGNWE QYWEALLGVL QAPPVYLPTL ESLIESFSPS LSTMVESSIR EEMDFAVDSD  360
GFALDFISEH LFDGGCGGVP VDSTQVPGDV TFPVPQPQPE FQPMSSLLPP PPQQQAGRYV  420
DLTHEYMRAA PAAAAAAFRA QELSAAVMIK FGSEPSSPVA RPPLTITVPP SSYASAEPVT  480
SPVPAAAAAA AAAVDDDFRK YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT YDTPIEAARA  540
YDRAAFRMRG AKAILNFPNE VGTRGADLWA PPPPPVATQT APANKPKRQQ EEPDVEVVAV  600
VNKVMKIEVP SSSSLSSTLV SSTSPSSMST RETTATASSS VTSTATTAEP GTGAEWLPVT  660
PSSGNWEQYW EALLGGLPPL SPLSPHPSFA NTRPDRFGFQ LEIWKSSITP ARGADVMAFT  720
GDADGFALDL IREHLLGGGC GGDAADNPVV SDDVSFPVLP QPQQEFEPMP FLPQQQQGYM  780
DLTHEYMGGS PAVGEAAAFP EQQQEAPVII KFGSEHYSAP VRQPLTISVP PSSYAWAATT  840
PAAAPAAEVE DYRKYRGVRL RPWGKYAAEI RDPKRRGSRV WLGTYDTPVE AARAYDRAAF  900
RMRGAKAILN FPNEVGTRGA DFWAPAAAPG TKAAAAANKR KRQQQEDRND DVEVFAVVNK  960
SVKVEVPSSS STQASSSTSP SSMSTRETTA SSTVTSTTTE TGAGAEWLPV TPSSGSFEQY  1020
WEALLGGLPP LSPLSPHPTL GFPQLPVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-25143917468ATERF1
2gcc_A4e-25143917468ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275253e-98KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956405.11e-116PREDICTED: ethylene-responsive transcription factor ERF105-like
STRINGSi032351m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-32ethylene responsive element binding factor 5